Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs11223654 | chr11:133841579 | C/T | 0.00014 | 489 | 15.97 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223655 | chr11:133842707 | G/A | 0.00014 | 488 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223656 | chr11:133842973 | T/A | 0.000141 | 486 | 16.07 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223658 | chr11:133843216 | G/A | 0.000141 | 486 | 16.07 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223659 | chr11:133844708 | G/A | 0.000142 | 485 | 16.02 | 15.9 | 8.73 | KM Plot |
| THCA | rs11223661 | chr11:133851412 | G/T | 0.00016 | 475 | 16.07 | 15.9 | 11.83 | KM Plot |
| THCA | rs112240253 | chr10:104753726 | C/T | 6.21E-9 | 489 | 15.3 | 17.63 | 32.1 | KM Plot |
| THCA | rs112251002 | chr11:8604217 | T/C | 4.56E-5 | 488 | 15.9 | 16.38 | 20.07 | KM Plot |
| THCA | rs112255065 | chr10:104665888 | C/T | 3.36E-8 | 488 | 15.33 | 17.13 | 19.1 | KM Plot |
| THCA | rs11228973 | chr11:57030244 | T/A | 6.09E-11 | 486 | 16.13 | 14.8 | 20.77 | KM Plot |
| THCA | rs11228995 | chr11:57083535 | T/C | 3.53E-11 | 488 | 16.3 | 14.8 | 15.58 | KM Plot |
| THCA | rs11228996 | chr11:57083536 | G/C | 3.53E-11 | 488 | 16.3 | 14.8 | 15.58 | KM Plot |
| THCA | rs11228997 | chr11:57084029 | T/G | 3.6E-11 | 486 | 16.33 | 14.6 | 15.58 | KM Plot |
| THCA | rs11229003 | chr11:57108291 | G/A | 5.92E-11 | 481 | 16.27 | 14.73 | 17.78 | KM Plot |
| THCA | rs11231215 | chr11:62548365 | C/T | 8.33E-5 | 483 | 16.23 | 14.33 | 14.27 | KM Plot |